BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.
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Bump the pip group across 1 directory with 6 updates #35
verify=True now reuses a global SSLContext which should improve
request time variance between first and subsequent requests. It should
also minimize certificate load time on Windows systems when using a Python
version built with OpenSSL 3.x. (#6667)
Requests now supports optional use of character detection
(chardet or charset_normalizer) when repackaged or vendored.
This enables pip and other projects to minimize their vendoring
surface area. The Response.text() and apparent_encoding APIs
will default to utf-8 if neither library is present. (#6702)
Bugfixes
Fixed bug in length detection where emoji length was incorrectly
calculated in the request content-length. (#6589)
Fixed deserialization bug in JSONDecodeError. (#6629)
Fixed bug where an extra leading / (path separator) could lead
urllib3 to unnecessarily reparse the request URI. (#6644)
Deprecations
Requests has officially added support for CPython 3.12 (#6503)
Requests has officially added support for PyPy 3.9 and 3.10 (#6641)
Requests has officially dropped support for CPython 3.7 (#6642)
Requests has officially dropped support for PyPy 3.7 and 3.8 (#6641)
Documentation
Various typo fixes and doc improvements.
Packaging
Requests has started adopting some modern packaging practices.
The source files for the projects (formerly requests) is now located
in src/requests in the Requests sdist. (#6506)
Starting in Requests 2.33.0, Requests will migrate to a PEP 517 build system
using hatchling. This should not impact the average user, but extremely old
versions of packaging utilities may have issues with the new packaging format.
verify=True now reuses a global SSLContext which should improve
request time variance between first and subsequent requests. It should
also minimize certificate load time on Windows systems when using a Python
version built with OpenSSL 3.x. (#6667)
Requests now supports optional use of character detection
(chardet or charset_normalizer) when repackaged or vendored.
This enables pip and other projects to minimize their vendoring
surface area. The Response.text() and apparent_encoding APIs
will default to utf-8 if neither library is present. (#6702)
Bugfixes
Fixed bug in length detection where emoji length was incorrectly
calculated in the request content-length. (#6589)
Fixed deserialization bug in JSONDecodeError. (#6629)
Fixed bug where an extra leading / (path separator) could lead
urllib3 to unnecessarily reparse the request URI. (#6644)
Deprecations
Requests has officially added support for CPython 3.12 (#6503)
Requests has officially added support for PyPy 3.9 and 3.10 (#6641)
Requests has officially dropped support for CPython 3.7 (#6642)
Requests has officially dropped support for PyPy 3.7 and 3.8 (#6641)
Documentation
Various typo fixes and doc improvements.
Packaging
Requests has started adopting some modern packaging practices.
The source files for the projects (formerly requests) is now located
in src/requests in the Requests sdist. (#6506)
Starting in Requests 2.33.0, Requests will migrate to a PEP 517 build system
using hatchling. This should not impact the average user, but extremely old
versions of packaging utilities may have issues with the new packaging format.
This release is a milestone: it fixes Black's first CVE security vulnerability. If you
run Black on untrusted input, or if you habitually put thousands of leading tab
characters in your docstrings, you are strongly encouraged to upgrade immediately to fix
CVE-2024-21503.
This release also fixes a bug in Black's AST safety check that allowed Black to make
incorrect changes to certain f-strings that are valid in Python 3.12 and higher.
Stable style
Don't move comments along with delimiters, which could cause crashes (#4248)
Strengthen AST safety check to catch more unsafe changes to strings. Previous versions
of Black would incorrectly format the contents of certain unusual f-strings containing
nested strings with the same quote type. Now, Black will crash on such strings until
support for the new f-string syntax is implemented. (#4270)
Fix a bug where line-ranges exceeding the last code line would not work as expected
(#4273)
Performance
Fix catastrophic performance on docstrings that contain large numbers of leading tab
characters. This fixes
CVE-2024-21503.
(#4278)
Documentation
Note what happens when --check is used with --quiet (#4236)
24.2.0
Stable style
Fixed a bug where comments where mistakenly removed along with redundant parentheses
(#4218)
Preview style
Move the hug_parens_with_braces_and_square_brackets feature to the unstable style
due to an outstanding crash and proposed formatting tweaks (#4198)
Fixed a bug where base expressions caused inconsistent formatting of ** in tenary
expression (#4154)
Checking for newline before adding one on docstring that is almost at the line limit
(#4185)
Remove redundant parentheses in case statement if guards (#4214).
This release is a milestone: it fixes Black's first CVE security vulnerability. If you
run Black on untrusted input, or if you habitually put thousands of leading tab
characters in your docstrings, you are strongly encouraged to upgrade immediately to fix
CVE-2024-21503.
This release also fixes a bug in Black's AST safety check that allowed Black to make
incorrect changes to certain f-strings that are valid in Python 3.12 and higher.
Stable style
Don't move comments along with delimiters, which could cause crashes (#4248)
Strengthen AST safety check to catch more unsafe changes to strings. Previous versions
of Black would incorrectly format the contents of certain unusual f-strings containing
nested strings with the same quote type. Now, Black will crash on such strings until
support for the new f-string syntax is implemented. (#4270)
Fix a bug where line-ranges exceeding the last code line would not work as expected
(#4273)
Performance
Fix catastrophic performance on docstrings that contain large numbers of leading tab
characters. This fixes
CVE-2024-21503.
(#4278)
Documentation
Note what happens when --check is used with --quiet (#4236)
24.2.0
Stable style
Fixed a bug where comments where mistakenly removed along with redundant parentheses
(#4218)
Preview style
Move the hug_parens_with_braces_and_square_brackets feature to the unstable style
due to an outstanding crash and proposed formatting tweaks (#4198)
Fixed a bug where base expressions caused inconsistent formatting of ** in tenary
expression (#4154)
Checking for newline before adding one on docstring that is almost at the line limit
(#4185)
Remove redundant parentheses in case statement if guards (#4214).
* Fixed a null-pointer-dereference and segfault that could occur when creating
a PKCS#12 bundle. Credit to **Alexander-Programming** for reporting the
issue. **CVE-2024-26130**
* Fixed ASN.1 encoding for PKCS7/SMIME signed messages. The fields ``SMIMECapabilities``
and ``SignatureAlgorithmIdentifier`` should now be correctly encoded according to the
definitions in :rfc:`2633` :rfc:`3370`.
.. _v42-0-3:
42.0.3 - 2024-02-15
Fixed an initialization issue that caused key loading failures for some
users.
.. _v42-0-2:
42.0.2 - 2024-01-30
* Updated Windows, macOS, and Linux wheels to be compiled with OpenSSL 3.2.1.
* Fixed an issue that prevented the use of Python buffer protocol objects in
``sign`` and ``verify`` methods on asymmetric keys.
* Fixed an issue with incorrect keyword-argument naming with ``EllipticCurvePrivateKey``
:meth:`~cryptography.hazmat.primitives.asymmetric.ec.EllipticCurvePrivateKey.exchange`,
``X25519PrivateKey``
:meth:`~cryptography.hazmat.primitives.asymmetric.x25519.X25519PrivateKey.exchange`,
``X448PrivateKey``
:meth:`~cryptography.hazmat.primitives.asymmetric.x448.X448PrivateKey.exchange`,
and ``DHPrivateKey``
:meth:`~cryptography.hazmat.primitives.asymmetric.dh.DHPrivateKey.exchange`.
.. _v42-0-1:
42.0.1 - 2024-01-24
Fixed an issue with incorrect keyword-argument naming with EllipticCurvePrivateKey
:meth:~cryptography.hazmat.primitives.asymmetric.ec.EllipticCurvePrivateKey.sign.
Resolved compatibility issue with loading certain RSA public keys in
:func:~cryptography.hazmat.primitives.serialization.load_pem_public_key.
Fix issue where specially crafted inputs to encode() could
take exceptionally long amount of time to process. [CVE-2024-3651]
Thanks to Guido Vranken for reporting the issue.
3.6 (2023-11-25)
++++++++++++++++
Fix regression to include tests in source distribution.
3.5 (2023-11-24)
++++++++++++++++
Update to Unicode 15.1.0
String codec name is now "idna2008" as overriding the system codec
"idna" was not working.
Fix typing error for codec encoding
"setup.cfg" has been added for this release due to some downstream
lack of adherence to PEP 517. Should be removed in a future release
so please prepare accordingly.
Removed reliance on a symlink for the "idna-data" tool to comport
with PEP 517 and the Python Packaging User Guide for sdist archives.
Added security reporting protocol for project
Thanks Jon Ribbens, Diogo Teles Sant'Anna, Wu Tingfeng for contributions
to this release.
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You can disable automated security fix PRs for this repo from the [Security Alerts page](https://github.com/UMEssen/Body-and-Organ-Analysis/network/alerts).
dependabot[bot]
commented
4 months ago
Bumps the pip group with 6 updates in the / directory:
2.31.02.32.04.65.24.66.322.12.024.3.041.0.342.0.43.43.710.2.010.3.0Updates
requestsfrom 2.31.0 to 2.32.0Release notes
Sourced from requests's releases.
... (truncated)
Changelog
Sourced from requests's changelog.
Commits
d6ebc4av2.32.09a40d12Avoid reloading root certificates to improve concurrent performance (#6667)0c030f7Merge pull request #6702 from nateprewitt/no_char_detection555b870Allow character detection dependencies to be optional in post-packaging stepsd6dded3Merge pull request #6700 from franekmagiera/update-redirect-to-invalid-uri-testbf24b7dUse an invalid URI that will not cause httpbin to throw 5002d5f547Pin 3.8 and 3.9 runners back to macos-13 (#6688)f1bb07dMerge pull request #6687 from psf/dependabot/github_actions/github/codeql-act...60047adBump github/codeql-action from 3.24.0 to 3.25.031ebb81Merge pull request #6682 from frenzymadness/pytest8Updates
tqdmfrom 4.65.2 to 4.66.3Release notes
Sourced from tqdm's releases.
Commits
4e613f8Merge pull request from GHSA-g7vv-2v7x-gj9pb53348ccli: eval safetycc372d0bump version, merge pull request #1549 from tqdm/devele9f0c05use PyPI trusted publishing7323d5bslight makefile clean5306125tests: bump pre-commit4a6fd4ffix datetime.utcfromtimestamp py3.12 warning (#1519)6f13759tests: fix macos notebook indentation3abcd2atests: fix asva4d15c8tests: fix pandas warningsUpdates
blackfrom 22.12.0 to 24.3.0Release notes
Sourced from black's releases.
... (truncated)
Changelog
Sourced from black's changelog.
... (truncated)
Commits
552baf8Prepare release 24.3.0 (#4279)f000936Fix catastrophic performance in lines_with_leading_tabs_expanded() (#4278)7b5a657Fix --line-ranges behavior when ranges are at EOF (#4273)1abcffcUse regex where we ignore case on windows (#4252)719e674Fix 4227: Improve documentation for --quiet --check (#4236)e5510afupdate plugin url for Thonny (#4259)6af7d11Fix AST safety check false negative (#4270)f03ee11Ensureblib2to3.pygramis initialized before use (#4224)e4bfedbfix: Don't move comments while splitting delimiters (#4248)d0287e1Make trailing comma logic more concise (#4202)Updates
cryptographyfrom 41.0.3 to 42.0.4Changelog
Sourced from cryptography's changelog.
... (truncated)
Commits
fe18470Bump for 42.0.4 release (#10445)aaa2dd0Fix ASN.1 issues in PKCS#7 and S/MIME signing (#10373) (#10442)7a4d012Fixes #10422 -- don't crash when a PKCS#12 key and cert don't match (#10423) ...df314bbbackport actions m1 switch to 42.0.x (#10415)c49a7a5changelog and version bump for 42.0.3 (#10396)396bcf6fix provider loading take two (#10390) (#10395)0e0e46fbackport: initialize openssl's legacy provider in rust (#10323) (#10333)2202123changelog and version bump 42.0.2 (#10268)f7032bdbump openssl in CI (#10298) (#10299)002e886Fixes #10294 -- correct accidental change to exchange kwarg (#10295) (#10296)Updates
idnafrom 3.4 to 3.7Release notes
Sourced from idna's releases.
Changelog
Sourced from idna's changelog.
Commits
1d365e1Release v3.7c1b3154Merge pull request #172 from kjd/optimize-contextj0394ec7Merge branch 'master' into optimize-contextjcd58a23Merge pull request #152 from elliotwutingfeng/dev5beb28bMore efficient resolution of joiner contexts1b12148Update ossf/scorecard-action to v2.3.1d516b87Update Github actions/checkout to v4c095c75Merge branch 'master' into dev60a0a4cFix typo in GitHub Actions workflow key5918a0eMerge branch 'master' into devUpdates
pillowfrom 10.2.0 to 10.3.0Release notes
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... (truncated)
Commits
5c89d8810.3.0 version bump63cbfcfUpdate CHANGES.rst [ci skip]2776126Merge pull request #7928 from python-pillow/lcmsaeb51cbMerge branch 'main' into lcms5beb0b6Update CHANGES.rst [ci skip]cac6ffaMerge pull request #7927 from python-pillow/imagemathf5eeeacName as 'options' in lambda_eval and unsafe_eval, but '_dict' in deprecated evalfacf3afAdded release notes2a93abaUse strncpy to avoid buffer overflowa670597Update CHANGES.rst [ci skip]Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
@dependabot rebase.Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show