ZeweiSong
commented
2 years ago It doesn't matter. What FUNGuild uses is the taxonomy column.
Good luck!
Zewei
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From: andressamv @.> Sent: Monday, January 10, 2022 7:54:34 PM To: UMNFuN/FUNGuild @.> Cc: Subscribed @.***> Subject: [UMNFuN/FUNGuild] Read counts or relative abundances? (Issue #64)
Hello! This is my first time using FUNGuild and I would like to know more about the ASV input table. Should I use read counts or relative abundances? I am trying to check this by opening the example OTU table (http://www.stbates.org/guilds/download_examples.php/?download_file=otu_table_example.txthttps://apac01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.stbates.org%2Fguilds%2Fdownload_examples.php%2F%3Fdownload_file%3Dotu_table_example.txt&data=04%7C01%7C%7Cb234a8efdb36471f107608d9d42ff879%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C637774124765669706%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=x73TGd%2BbPkedWVH6s1JGXMtn3y0LFiQT%2FuID8d%2Be7Zc%3D&reserved=0) but it is unavailable. Thank you.
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andressamv
Hello! This is my first time using FUNGuild and I would like to know more about the ASV input table. Should I use read counts or relative abundances? I am trying to check this by opening the example OTU table (http://www.stbates.org/guilds/download_examples.php/?download_file=otu_table_example.txt) but it is unavailable. Thank you.