Issue is a wish request, low priority for now
Raw data from BaseSpace (illumina fastq.gz) comes in a format wherein each sample is divided into 4 files (for NextSeq 500 series machines) corresponding to 4 quadrants of the chip. Current methods involve unzipping, concatenating and re-zipping these inputs before sending to pipeline. As yet, not automated.
rltillett
commented
7 years ago
Issue is a wish request, low priority for now Raw data from BaseSpace (illumina fastq.gz) comes in a format wherein each sample is divided into 4 files (for NextSeq 500 series machines) corresponding to 4 quadrants of the chip. Current methods involve unzipping, concatenating and re-zipping these inputs before sending to pipeline. As yet, not automated.