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UPHL-BioNGS / Cecret

Reference-based consensus creation
MIT License
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How to output iqtree results into specific directory? #124

Closed ybdong919 closed 1 year ago

erinyoung commented 1 year ago

The directory of results for iqtree2 are set by the outdir parameter. Specifically, ${params.outdir}/iqtree2.

The default outdir value is cecret in your current directory, but you can change this by running

nextflow run UPHL-BioNGS/Cecret --reads <path to reads> --outdir <path to where you want your results>

Or by setting the parameter value in a config file:

params.outdir = '<path to where you want your results>'
ybdong919 commented 1 year ago

Many thanks for your reply! Have a great day!

Yibo

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The directory of results for iqtree2 are set by the outdir parameter. Specifically, ${params.outdir}/iqtree2.

The default outdir value is cecret in your current directory, but you can change this by running

nextflow run UPHL-BioNGS/Cecret --reads --outdir

Or by setting the parameter value in a config file:

params.outdir = ''

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