search

UPHL-BioNGS / Cecret

Reference-based consensus creation
MIT License
50 stars 27 forks source link

Detect recombinants #126

Closed erinyoung closed 4 weeks ago

erinyoung commented 1 year ago

There are a few tools out there that detect recombinants that might be worth adding to SARS-CoV-2. These are stolen from a slack thread with the main contributors being Bani Jolly, Wytamma Wirth, and Finlay Maguire.

sc2rf ncov-recombinant Ripples 3seq Hyphy GARD

erinyoung commented 4 weeks ago

I think something like freyja is satisfactory