Version check

[github-actions[bot]]

Needing updates:
- staphb/bcftools from 1.16 to 1.17
- staphb/fastqc from 0.11.9 to 0.12.1
- staphb/freyja from 1.3.11 to 1.4.2
- staphb/ivar from 1.3.1 to 1.3.2
- staphb/kraken2 from 2.1.2-no-db to 2.1.2
- staphb/mafft from 7.475 to 7.505
- staphb/samtools from 1.16 to 1.17
- staphb/vadr from 1.5 to 1.5.1