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UPHL-BioNGS / Cecret

Reference-based consensus creation
MIT License
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mpx_idt profile #171

Closed tpillone closed 1 year ago

tpillone commented 1 year ago

Hi,

I'm trying to run Ceret using the Monkeypox IDT profile (mpx_idt), but the the config file _mpxidt.config seems to be missing from the configs folder. Am I missing something?

Thank you

erinyoung commented 1 year ago

You are 100% correct. What an oversight on our part! (We had them locally, but just never committed them. How embarrassing!)

Pull request https://github.com/UPHL-BioNGS/Cecret/pull/172 should resolve this issue.

You can use this branch before it is merged with 

nextflow pull UPHL-BioNGS/Cecret
nextflow run UPHL-BioNGS/Cecret -r config <everything else you had in your command line>
tpillone commented 1 year ago

Thanks a lot for the quick reply!