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UPHL-BioNGS / Cecret

Reference-based consensus creation
MIT License
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Add primer efficiency evaluation #188

Closed erinyoung closed 1 year ago

erinyoung commented 1 year ago

One of the key questions that keeps getting asked is if primer schemes are working. There are ways from this workflow to determine if primer pairs are working (see https://github.com/UPHL-BioNGS/Cecret#is-there-a-way-to-determine-if-certain-amplicons-are-failing), but these methods require extra steps.

Wouldn't it be awesome if there was something in this workflow that created a graph or something?

erinyoung commented 1 year ago

https://github.com/UPHL-BioNGS/Cecret/pull/194 now creates some images that get incorporated into multiqc.

I need to still generate images and put them into the readme, but this is a start.

erinyoung commented 1 year ago

I've decided to spin this idea out into its own repo : https://github.com/erinyoung/ACI

I'm hoping to get this to conda soon