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UPHL-BioNGS / Cecret

Reference-based consensus creation
MIT License
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Adjust to nf-core template #215

Open erinyoung opened 10 months ago

erinyoung commented 10 months ago

To make it more portable.

erinyoung commented 10 months ago

Notes :

There are some aspects of the nf-core template that I'd like to avoid, such as defining variables in the config file in such a way that they can not be overridden on the command line.

Other things can be adopted. For example, https://github.com/UPHL-BioNGS/Cecret/pull/221 uses the same process labels.

erinyoung commented 8 months ago

Guide for how to do this : https://github.com/apetkau/nf-core-assemblyexample