UQ-RCC / ipp

The IPP is a Web portal for biologists to interact with High Performance Compute (HPC) systems. Designed and funded by the IMB Microscopy Facility & the Research Computing Centre (RCC)
https://rcc.uq.edu.au/
MIT License
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Define dataset shape for CVL #107

Open DrSpringy opened 2 years ago

DrSpringy commented 2 years ago

The Desktop Manager launcher should have a way to define the dimensions of the selected dataset/s for import into FIJI/Napari etc

So if you select a single file we don't usually have a problem, but there might be opportunities to include missing metadata such as channel name, wavelength etc etc, or flip the dataset Z vs T etc.

But when selected say lots of .tif z-stack files, neither ImageJ or Napari reads them in as a time series, we should have the ability to do that via a simple GUI

something like this, but nicer

Screen Shot 2022-02-03 at 2 12 30 pm