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UQ-RCC / ipp

The IPP is a Web portal for biologists to interact with High Performance Compute (HPC) systems. Designed and funded by the IMB Microscopy Facility & the Research Computing Centre (RCC)
https://rcc.uq.edu.au/
MIT License
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Converter job failed #32

Closed IMBMicroscopy closed 3 years ago

IMBMicroscopy commented 3 years ago

job id KXbRws9Qg9xd9DKnLaKVWw

ran but failed after 1min and 5 unsuccessful attempts to retrieve the file, yet the admin page said it was successful it would be good if it waited something like, 1min, 2min,5min,10min,30min between attempts

IMBMicroscopy commented 3 years ago

the image actually opens on CVL from that location, but maybe it's a different issue, such as the converter failing to convert the file?

Converting file /afm01/Q0/Q0703/Do_Not_Delete_Typical_Datasets_In_Out_Of_Portal/Dfly/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_Field_1/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_F0.ims Copy /afm01/Q0/Q0703/Do_Not_Delete_Typical_Datasets_In_Out_Of_Portal/Dfly/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_Field_1/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_F0.ims to /scratch/imb/uqjspri1/148d8e13-9605-4925-ae1a-c10fb1c0aa79/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_Field_1 Metadata file: /afm01/Q0/Q0703/Do_Not_Delete_Typical_Datasets_In_Out_Of_Portal/Dfly/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_Field_1/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_F0_metadata.txt Copy /afm01/Q0/Q0703/Do_Not_Delete_Typical_Datasets_In_Out_Of_Portal/Dfly/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_Field_1/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_F0_metadata.txt to /scratch/imb/uqjspri1/148d8e13-9605-4925-ae1a-c10fb1c0aa79/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_Field_1 File /afm01/Q0/Q0703/Do_Not_Delete_Typical_Datasets_In_Out_Of_Portal/Dfly/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_Field_1/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_F0_metadata.txt does not exist |---- Recall attempt 1 failed |---- Recall attempt 2 failed |---- Recall attempt 3 failed |---- Recall attempt 4 failed ---->Problem with file /afm01/Q0/Q0703/Do_Not_Delete_Typical_Datasets_In_Out_Of_Portal/Dfly/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_Field_1/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_F0.ims ----->Stopping preprocessing process here Copy /scratch/imb/uqjspri1/e0f308f6-6f00-4dc4-885f-788c3b392a53 to /afm01/Q0/Q0703/Do_Not_Delete_Typical_Datasets_In_Out_Of_Portal/Dfly/NewFilename_2021-08-04_Simultaneous GFP-RFP 40um_08.20.05_Field_1/output_convert Removing /scratch/imb/uqjspri1/148d8e13-9605-4925-ae1a-c10fb1c0aa79 Removing /scratch/imb/uqjspri1/e0f308f6-6f00-4dc4-885f-788c3b392a53

IMBMicroscopy commented 3 years ago

put on hold for now