Open zx8754 opened 3 weeks ago
?regionQuery gives shows these arguments:
?regionQuery
regionQuery(contig, start, end)
And example from manuals - https://uscbiostats.github.io/annoq-site/docs/tutorials/r-package does not work:
variants = regionQuery(contig = '20', start=31710367, end=31820367)
But the function requires: chr, start, end, annotations_to_retrieve.
chr, start, end, annotations_to_retrieve
This works fine:
x <- regionQuery(chr = '20', start = 31710367, end = 31820367, annotations_to_retrieve = "SnpEff_ensembl_Effect") nrow(x) # [1] 1785
?regionQuery
gives shows these arguments:And example from manuals - https://uscbiostats.github.io/annoq-site/docs/tutorials/r-package does not work:
But the function requires:
chr, start, end, annotations_to_retrieve
.This works fine: