USCbiostats R Package checklist

[gvegayon]

New Core C/D Assessment Project Template

This document provides a general framework for assessing the software and computing needs of a particular project.

The first step consists of answering the following questions:

• [x] In a paragraph, describe what is the project about.
• [x] List the project's specific goals (e.g. make the method available for public use, create a web service, present this analysis)
• [x] Think about what are your computing/software needs, and list them.

Once a general overview of the project has been defined, the next step consists of analyzing the following:

R packages development

Fundamental questions/tasks

• [x] Check for other R packages/software that does what the project tries to do.
• [x] Describe the ultimate goal of your R package (e.g. solve an optim problem, implement a visualization problem, estimate parameters, etc.)
• [x] Think about data (if any needed), in particular, input/output, have you checked any R packages that already have this?
• [x] Create a repository for the package.

Once the project is on git, following checkmarks

• [x] The package uses roxygen2 (you can turn your package Rd files to roxygen using Rd2roxygen).
• [x] The package's functions are thoroughly documented. This includes Description, parameters (@param), value (@return), details (if any), examples (@details), references (@references) and links to other functions (@seealso, and @family).
• [ ] The package has been fully tested using testthat or another framework.
• [ ] The project is built using Continuous Integration services as Travis-ci and Appveyor (use the usethis package to set it up, eg: usethis::use_travis).
• [x] The package includes a vignette with an extended example and, if needed, references on the package.
• [ ] The package has a website (suggest using pkgdown)

Sending a package to CRAN

Prepare for release:

• [x] devtools::check_win_devel()
• [x] rhub::check_for_cran()
• [ ] revdepcheck::revdep_check(num_workers = 4)
• [x] Polish NEWS
• [ ] If new failures, update email.yml then revdepcheck::revdep_email_maintainers()

Perform release:

• [ ] Bump version (in DESCRIPTION and NEWS)
• [x] devtools::check_win_devel() (again!)
• [x] devtools::submit_cran()
• [ ] pkgdown::build_site()
• [x] Approve email

Wait for CRAN...

• [x] Tag release
• [ ] Bump dev version

Sending a package to Bioconductor

Prepare for release:

• [ ] Pass R CMD check and R CMD Biocheck
• [ ] Go visit this guidance site
• [ ] Add SSH public key(s) to your GitHub account
• [ ] Add a webhook to your repository
• [ ] Submit by opening a new issue in the Bioconductor Contributions repository.

Perform release:

• [ ] Bump version (in DESCRIPTION and NEWS) which triggers the submission
• [ ] Receive emails about successfully building your package without errors or warnings.
• [ ] A technical review provided by a Bioconductor team member
• [ ] Approve email

[gvegayon]

Hey @Yinqi93 please consider moving this repository to USCBiostats. LMK if you need help with that.