USEPA CompTox-ToxCast-tcpl issues

USEPA / CompTox-ToxCast-tcpl

US EPA's Toxicity Forecaster (ToxCast) Pipeline. More information on the ToxCast program available here: https://www.epa.gov/comptox-tools/toxicity-forecasting-toxcast

https://cran.r-project.org/package=tcpl

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issues

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Add CRAN check to github actions

#290 madison-feshuk opened 1 day ago
0
286 technical review comments

#289 madison-feshuk closed 3 weeks ago
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Add analytical QC flag logic to vignette table

#288 madison-feshuk closed 3 weeks ago
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286 technical review comments

#287 brown-jason closed 3 weeks ago
0
technical review comments

#286 brown-jason closed 3 weeks ago
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Investigate purpose of chemical code

#285 madison-feshuk opened 1 month ago
0
Incorporate tech review comments for tcpl 3.2 release

#284 madison-feshuk closed 3 weeks ago
0
259 remove tcpl lite and add api throughout package

#283 cthunes closed 3 weeks ago
0
Large update to unit test suite including mocking invitrodb and CTX API data

#282 cthunes closed 1 month ago
0
210-size-clean-up

#281 madison-feshuk closed 1 month ago
1
Investigate tcplPlot ggplot bug when type = "sc" verbose = FALSE and compare.val is set

#280 cthunes opened 1 month ago
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278 require nhit = 2 for tcplcytopt calculations

#279 brown-jason closed 2 months ago
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Require nhit >= 2 for tcplCytoPt calculations

#278 madison-feshuk closed 2 months ago
1
276 added mc7 to tcplLoadData, only for MySQL connections

#277 cthunes closed 2 months ago
0
Add mc7 to tcplLoadData

#276 madison-feshuk closed 2 months ago
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215 updated tcplPlot to return ggplot object if only 1 plot

#275 cthunes opened 2 months ago
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267 created separate tcplPlotLoadData function to export and refactored related code

#274 cthunes closed 2 months ago
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268 update references to ccdR to use ctxR instead

#273 cthunes closed 2 months ago
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create mc5_model_type table in invitrodb

#272 cthunes closed 2 months ago
1
First pass vignette updates for v3.2 release

#271 cthunes closed 1 month ago
0
changed load clib to chemlist

#270 brown-jason closed 2 months ago
0
removed gnls filter

#269 brown-jason closed 2 months ago
0
Update ccdR dependency to ctxR for API connection

#268 madison-feshuk closed 2 months ago
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Export tcplPlotLoadData as separate .R file

#267 madison-feshuk closed 2 months ago
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Add CRAN status and monthly downloads badges

#266 madison-feshuk closed 1 month ago
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262 remove duplicate columns resolves load error

#265 cthunes closed 3 months ago
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230 update tcpl var mat docs

#264 cthunes closed 2 months ago
1
Excluding export_ready 0 from tcplRun

#263 Ashley-Ko opened 4 months ago
0
tcplloaddata with joined tables errors on select statement

#262 brown-jason closed 3 months ago
3
Added sc1 method bval.nwlls.med

#261 Kelly-Carstens-EPA closed 3 months ago
1
231 add data retrieval via api vignette

#260 cthunes closed 3 months ago
2
Remove tcplLite and add API throughout package

#259 cthunes closed 3 weeks ago
1
Add sc1 method for bval by wllt

#258 Kelly-Carstens-EPA closed 3 months ago
1
235 247 248 206 api plotting and bug fixes

#257 cthunes closed 3 months ago
1
Move wllt loading out of ggplot functions and into overall loading data in utils

#256 cthunes opened 4 months ago
0
Add progress bar to tcplPlot and tcplRun

#255 madison-feshuk opened 4 months ago
0
Add parameter to hide warnings in tcplRun and tcplPlot by default

#254 madison-feshuk opened 4 months ago
0
tcplPlotcompare: Units do not match

#253 brown-jason closed 3 months ago
0
Replace chid as dtxsid

#252 madison-feshuk opened 4 months ago
0
tcplLoadClib update to tcplLoadChemList

#251 madison-feshuk closed 2 months ago
0
Tcpllegacy needs to be tested/working at some point

#250 brown-jason opened 4 months ago
0
val should be optional if dat is given (standalone)

#249 brown-jason opened 4 months ago
0
checking wllt to fix names in tcplPlot fails with sc

#248 cthunes closed 3 months ago
0
tcplPlot error for obscure well types

#247 madison-feshuk closed 3 months ago
0
233 expand ccd r integration into tcpl load funcs

#246 cthunes closed 5 months ago
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243 update blineshift and related methods

#245 cthunes closed 5 months ago
0
Add warning if mixed well types present in mc0

#244 madison-feshuk opened 5 months ago
0
Update blineshift.R to account for bidirectionality

#243 madison-feshuk closed 5 months ago
1
Standalone Plotting (and comparison between versions of invitrodb)

#242 brown-jason closed 5 months ago
0
TcplPlot refactoring

#241 brown-jason opened 5 months ago
1