thomascjohnson
commented
3 years ago There was an issue processing your package addition request. Tagging @thomascjohnson to debug and closing the issue. See the logs:
Error in value[[3L]](cond): Error building nloptr
Build output:
* installing to library '/opt/Rlib'* installing *source* package 'nloptr' ...file 'R/PkgFlags.R' has the wrong MD5 checksum** using staged installationchecking whether the C++ compiler works... yeschecking for C++ compiler default output file name... a.outchecking for suffix of executables... checking whether we are cross compiling... nochecking for suffix of object files... ochecking whether we are using the GNU C++ compiler... yeschecking whether g++ -std=gnu++11 accepts -g... yeschecking how to run the C++ preprocessor... g++ -std=gnu++11 -Echecking whether we are using the GNU C++ compiler... (cached) yeschecking whether g++ -std=gnu++11 accepts -g... (cached) yeschecking for pkg-config... yesconfigure: Now testing for NLopt header file.checking for grep that handles long lines and -e... /bin/grepchecking for egrep... /bin/grep -Echecking for ANSI C header files... yeschecking for sys/types.h... yeschecking for sys/stat.h... yeschecking for stdlib.h... yeschecking for string.h... yeschecking for memory.h... yeschecking for strings.h... yeschecking for inttypes.h... yeschecking for stdint.h... yeschecking for unistd.h... yeschecking nlopt.h usability... nochecking nlopt.h presence... nochecking for nlopt.h... noconfigure: Need to configure and build NLoptconfigure: Starting to install library to /tmp/RtmpNdkDIb/CRANpiled-untarred-packages/nloptr/src/nlopt_srcchecking for a BSD-compatible install... /usr/bin/install -cchecking whether build environment is sane... yeschecking for a thread-safe mkdir -p... /bin/mkdir -pchecking for gawk... nochecking for mawk... mawkchecking whether make sets $(MAKE)... yeschecking whether make supports nested variables... yeschecking whether to enable maintainer-specific portions of Makefiles... nochecking for gcc... gcc -std=gnu99checking whether the C compiler works... yeschecking for C compiler default output file name... a.outchecking for suffix of executables... checking whether we are cross compiling... nochecking for suffix of object files... ochecking whether we are using the GNU C compiler... yeschecking whether gcc -std=gnu99 accepts -g... yeschecking for gcc -std=gnu99 option to accept ISO C89... none neededchecking whether gcc -std=gnu99 understands -c and -o together... yeschecking for style of include used by make... GNUchecking dependency style of gcc -std=gnu99... gcc3checking for gcc -std=gnu99 option to accept ISO C99... none neededchecking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none neededchecking whether ln -s works... yeschecking whether make sets $(MAKE)... (cached) yeschecking build system type... x86_64-unknown-linux-gnuchecking host system type... x86_64-unknown-linux-gnuchecking how to print strings... printfchecking for a sed that does not truncate output... /bin/sedchecking for grep that handles long lines and -e... /bin/grepchecking for egrep... /bin/grep -Echecking for fgrep... /bin/grep -Fchecking for ld used by gcc -std=gnu99... /usr/bin/ldchecking if the linker (/usr/bin/ld) is GNU ld... yeschecking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -Bchecking the name lister (/usr/bin/nm -B) interface... BSD nmchecking the maximum length of command line arguments... 1572864checking whether the shell understands some XSI constructs... yeschecking whether the shell understands "+="... yeschecking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noopchecking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noopchecking for /usr/bin/ld option to reload object files... -rchecking for objdump... objdumpchecking how to recognize dependent libraries... pass_allchecking for dlltool... dlltoolchecking how to associate runtime and link libraries... printf %s\nchecking for archiver @FILE support... @checking for strip... stripchecking for ranlib... ranlibchecking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... okchecking for sysroot... nochecking for mt... mtchecking if mt is a manifest tool... nochecking how to run the C preprocessor... gcc -std=gnu99 -Echecking for ANSI C header files... yeschecking for sys/types.h... yeschecking for sys/stat.h... yeschecking for stdlib.h... yeschecking for string.h... yeschecking for memory.h... yeschecking for strings.h... yeschecking for inttypes.h... yeschecking for stdint.h... yeschecking for unistd.h... yeschecking for dlfcn.h... yeschecking for objdir... .libschecking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... nochecking for gcc -std=gnu99 option to produce PIC... -fPIC -DPICchecking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yeschecking if gcc -std=gnu99 static flag -static works... yeschecking if gcc -std=gnu99 supports -c -o file.o... yeschecking if gcc -std=gnu99 supports -c -o file.o... (cached) yeschecking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yeschecking whether -lc should be explicitly linked in... nochecking dynamic linker characteristics... GNU/Linux ld.sochecking how to hardcode library paths into programs... immediatechecking whether stripping libraries is possible... yeschecking if libtool supports shared libraries... yeschecking whether to build shared libraries... yeschecking whether to build static libraries... yeschecking whether we are using the GNU C++ compiler... yeschecking whether g++ -std=gnu++11 accepts -g... yeschecking dependency style of g++ -std=gnu++11... gcc3checking how to run the C++ preprocessor... g++ -std=gnu++11 -Echecking for ld used by g++ -std=gnu++11... /usr/bin/ld -m elf_x86_64checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yeschecking whether the g++ -std=gnu++11 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yeschecking for g++ -std=gnu++11 option to produce PIC... -fPIC -DPICchecking if g++ -std=gnu++11 PIC flag -fPIC -DPIC works... yeschecking if g++ -std=gnu++11 static flag -static works... yeschecking if g++ -std=gnu++11 supports -c -o file.o... yeschecking if g++ -std=gnu++11 supports -c -o file.o... (cached) yeschecking whether the g++ -std=gnu++11 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yeschecking dynamic linker characteristics... (cached) GNU/Linux ld.sochecking how to hardcode library paths into programs... immediatechecking for ANSI C header files... (cached) yeschecking whether time.h and sys/time.h may both be included... yeschecking for unistd.h... (cached) yeschecking getopt.h usability... yeschecking getopt.h presence... yeschecking for getopt.h... yeschecking for stdint.h... (cached) yeschecking for an ANSI C-conforming const... yeschecking for inline... inlinechecking for C thread-local keyword... __threadchecking size of unsigned int... 4checking size of unsigned long... 8checking for uint32_t... yeschecking for sin in -lm... yeschecking for BSDgettimeofday... nochecking for gettimeofday... yeschecking for time... yeschecking for qsort_r... yeschecking for getpid... yeschecking for gettid syscall... yeschecking for isnan... yeschecking for isinf... yeschecking for copysign... yeschecking for mkoctfile... nochecking for mex... nochecking for working HUGE_VAL... okchecking that generated files are newer than configure... doneconfigure: creating ./config.statusconfig.status: creating Makefileconfig.status: creating nlopt.pcconfig.status: creating api/Makefileconfig.status: creating util/Makefileconfig.status: creating octave/Makefileconfig.status: creating direct/Makefileconfig.status: creating cdirect/Makefileconfig.status: creating stogo/Makefileconfig.status: creating praxis/Makefileconfig.status: creating luksan/Makefileconfig.status: creating crs/Makefileconfig.status: creating mlsl/Makefileconfig.status: creating mma/Makefileconfig.status: creating cobyla/Makefileconfig.status: creating newuoa/Makefileconfig.status: creating neldermead/Makefileconfig.status: creating auglag/Makefileconfig.status: creating bobyqa/Makefileconfig.status: creating isres/Makefileconfig.status: creating slsqp/Makefileconfig.status: creating esch/Makefileconfig.status: creating test/Ma
Package: nloptr