UUPharmacometrics / xpose

Graphical diagnostics for pharmacometric models
https://uupharmacometrics.github.io/xpose
GNU Lesser General Public License v3.0
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sdtab is not found #123

Closed humblewarrior closed 5 years ago

humblewarrior commented 5 years ago

Hi! I am pretty new to Xpose. I am trying to run Xpose through Pirana interface. When I try to run a model and execute it through NONMEM, it gives me the following message: "The table file sdtab002 was not found. Please check your output tables." Here 002 refers to a model file that was used. It is driving me nuts. In the morning, I seemed to figure out the problem for a while but it was an accident and I don't know how I figured it out in the morning. However, I am back to this same problem. Even when I try to execute model through PsN, it gives me the following message in the command window: " 'execute' is not recognized as an internal or external command, operable program or batch file. The table file sdtab002 was not found. Please check your output tables. Stopping R execution.Error in print(pl) : object 'pl' not found Execution halted C:\Users\Sumet\Desktop\PiranaSum\demo\auto_20181025\auto_20181025>"

PLEASE HELP ME!! As I said I am very new to Pirana, NONMEM, R and XPOSE.

bguiastr commented 5 years ago

Hello,

As it may be a problem related to Pirana, could you try to import the nonmem run directly from R? Try something like this:

xpdb <- xpose_data(dir = '/adjust/directory/as/needed/here', runno = '002')

This will look for the file run002.lst in the directory that you specified in the argument dir. From the lst file xpose will obtain the name of all your tables and automatically read them in.

Best of luck

bguiastr commented 5 years ago

I am closing this issue re-open if needed