UW-COSMOS / Cosmos

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XGBoost Error #183

Closed Deven-Biehler closed 1 year ago

Deven-Biehler commented 1 year ago

Hi, I'm getting the error "xgboost.core.XGBoostError: [19:37:37] ../src/learner.cc:1017: Check failed: fi->Read(&mparam, sizeof(mparam)) == sizeof(mparam_) (132 vs. 136) : BoostLearner: wrong model format" when trying to run "docker-compose -f deployment/docker-compose-ingest-newdc.yml -p cosmos up".

Here is my .env file:

BASE_IMAGE=uwcosmos/cosmos-base DETECT_IMAGE=uwcosmos/cosmos-ingestion WORKER_IMAGE=uwcosmos/cosmos-ingestion RETRIEVAL_IMAGE=uwcosmos/cosmos-retrieval EXTRACTION_IMAGE=ankurgos/cosmos-extraction:latest VISUALIZER_IMAGE=uwcosmos/visualizer_kb:latest UPLOAD_IMAGE=iaross/cosmos-api:latest API_IMAGE=iaross/cosmos-api:latest LINKING_IMAGE=uwcosmos/cosmos-linking

DETECT_PROCS=1 WORKER_PROCS=8

DEVICE=cuda RERANKING_DEVICE=cuda

SCHEDULER_ADDRESS=scheduler:8786 ELASTIC_ADDRESS=es01:9200 INPUT_DIR=../test/input TMP_DIR=../test/mytmp OUTPUT_DIR=../test/output ELASTIC_DATA_PATH=../test/example_elastic_out

here is my output of the error when running docker-compose -f deployment/docker-compose-ingest-newdc.yml -p cosmos up:

image

The entire output is below: image image image image image image image

iross commented 1 year ago

Hello-- What's the output of

docker inspect uwcosmos/cosmos-ingestion | grep -A 2 RepoDigests

?

On Wed, Jun 7, 2023 at 6:59 PM Deven-Biehler @.***> wrote:

Hi, I'm getting the error "xgboost.core.XGBoostError: [19:37:37] ../src/learner.cc:1017: Check failed: fi->Read(&mparam, sizeof(mparam)) == sizeof(mparam_) (132 vs. 136) : BoostLearner: wrong model format" when trying to run "docker-compose -f deployment/docker-compose-ingest-newdc.yml -p cosmos up".

Here is my .env file:

BASE_IMAGE=uwcosmos/cosmos-base DETECT_IMAGE=uwcosmos/cosmos-ingestion WORKER_IMAGE=uwcosmos/cosmos-ingestion RETRIEVAL_IMAGE=uwcosmos/cosmos-retrieval EXTRACTION_IMAGE=ankurgos/cosmos-extraction:latest VISUALIZER_IMAGE=uwcosmos/visualizer_kb:latest UPLOAD_IMAGE=iaross/cosmos-api:latest API_IMAGE=iaross/cosmos-api:latest LINKING_IMAGE=uwcosmos/cosmos-linking

DETECT_PROCS=1 WORKER_PROCS=8

DEVICE=cuda RERANKING_DEVICE=cuda

SCHEDULER_ADDRESS=scheduler:8786 ELASTIC_ADDRESS=es01:9200 INPUT_DIR=../test/input TMP_DIR=../test/mytmp OUTPUT_DIR=../test/output ELASTIC_DATA_PATH=../test/example_elastic_out

here is my output of the error when running docker-compose -f deployment/docker-compose-ingest-newdc.yml -p cosmos up:

[image: image] https://user-images.githubusercontent.com/124630485/244224460-b4a1f956-01d6-4cf1-8727-9fab976aed42.png

The entire output is below: [image: image] https://user-images.githubusercontent.com/124630485/244226321-6df99c11-ba19-49b3-bf8f-87e5a0b277c0.png [image: image] https://user-images.githubusercontent.com/124630485/244226447-0cd2e8a9-acb7-4fdb-acb7-3b0d7aa85942.png [image: image] https://user-images.githubusercontent.com/124630485/244226532-bc3acfd4-fe31-4162-b3bc-4c206ff1bebf.png [image: image] https://user-images.githubusercontent.com/124630485/244226813-9f9f611a-b2eb-4ce9-90dd-c1d2bfbc5898.png [image: image] https://user-images.githubusercontent.com/124630485/244226871-4dd47dc3-5f93-4a5b-ab76-1b397b9b2f67.png [image: image] https://user-images.githubusercontent.com/124630485/244226933-e8c418e4-a7b3-4b94-bdc2-1de9aee2e057.png [image: image] https://user-images.githubusercontent.com/124630485/244227017-90528271-b737-41e1-b523-f698ef15dee7.png

— Reply to this email directly, view it on GitHub https://github.com/UW-COSMOS/Cosmos/issues/183, or unsubscribe https://github.com/notifications/unsubscribe-auth/AALAW7I3WZ3USQ5F3YM2WYDXKEIWXANCNFSM6AAAAAAY6RTEGI . You are receiving this because you are subscribed to this thread.Message ID: @.***>

Deven-Biehler commented 1 year ago

"RepoDigests": [], "Parent": "", "Comment": "buildkit.dockerfile.v0",

Hello-- What's the output of docker inspect uwcosmos/cosmos-ingestion | grep -A 2 RepoDigests ? On Wed, Jun 7, 2023 at 6:59 PM Deven-Biehler @.> wrote: Hi, I'm getting the error "xgboost.core.XGBoostError: [19:37:37] ../src/learner.cc:1017: Check failed: fi->Read(&mparam, sizeof(mparam)) == sizeof(mparam_) (132 vs. 136) : BoostLearner: wrong model format" when trying to run "docker-compose -f deployment/docker-compose-ingest-newdc.yml -p cosmos up". Here is my .env file: BASE_IMAGE=uwcosmos/cosmos-base DETECT_IMAGE=uwcosmos/cosmos-ingestion WORKER_IMAGE=uwcosmos/cosmos-ingestion RETRIEVAL_IMAGE=uwcosmos/cosmos-retrieval EXTRACTION_IMAGE=ankurgos/cosmos-extraction:latest VISUALIZER_IMAGE=uwcosmos/visualizer_kb:latest UPLOAD_IMAGE=iaross/cosmos-api:latest API_IMAGE=iaross/cosmos-api:latest LINKING_IMAGE=uwcosmos/cosmos-linking DETECT_PROCS=1 WORKER_PROCS=8 DEVICE=cuda RERANKING_DEVICE=cuda SCHEDULER_ADDRESS=scheduler:8786 ELASTIC_ADDRESS=es01:9200 INPUT_DIR=../test/input TMP_DIR=../test/mytmp OUTPUT_DIR=../test/output ELASTIC_DATA_PATH=../test/example_elastic_out here is my output of the error when running docker-compose -f deployment/docker-compose-ingest-newdc.yml -p cosmos up: [image: image] https://user-images.githubusercontent.com/124630485/244224460-b4a1f956-01d6-4cf1-8727-9fab976aed42.png The entire output is below: [image: image] https://user-images.githubusercontent.com/124630485/244226321-6df99c11-ba19-49b3-bf8f-87e5a0b277c0.png [image: image] https://user-images.githubusercontent.com/124630485/244226447-0cd2e8a9-acb7-4fdb-acb7-3b0d7aa85942.png [image: image] https://user-images.githubusercontent.com/124630485/244226532-bc3acfd4-fe31-4162-b3bc-4c206ff1bebf.png [image: image] https://user-images.githubusercontent.com/124630485/244226813-9f9f611a-b2eb-4ce9-90dd-c1d2bfbc5898.png [image: image] https://user-images.githubusercontent.com/124630485/244226871-4dd47dc3-5f93-4a5b-ab76-1b397b9b2f67.png [image: image] https://user-images.githubusercontent.com/124630485/244226933-e8c418e4-a7b3-4b94-bdc2-1de9aee2e057.png [image: image] https://user-images.githubusercontent.com/124630485/244227017-90528271-b737-41e1-b523-f698ef15dee7.png — Reply to this email directly, view it on GitHub <#183>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AALAW7I3WZ3USQ5F3YM2WYDXKEIWXANCNFSM6AAAAAAY6RTEGI . You are receiving this because you are subscribed to this thread.Message ID: @.>

Deven-Biehler commented 1 year ago

I fixed this by simply removing the images that I had running and rerunning the command.