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UW-GAC
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genetable
A set of R functions to obtain gene definitions from an outside data source and make a table of those gene definitions in the GAC database
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Newer ENCODE gtf files break import regex
#26
bheavner
opened
5 years ago
0
Add example to readme.md
#25
bheavner
closed
7 years ago
1
add write_to_db function
#24
bheavner
opened
7 years ago
0
Add tests for save_to_file()
#23
bheavner
opened
7 years ago
0
When aggregating by gene, define_boundaries() has many NA gene_ids
#22
bheavner
closed
7 years ago
5
change dependencies for import_gencode()
#21
bheavner
closed
7 years ago
0
simplify find bounds function
#20
bheavner
opened
7 years ago
0
summarize_tag should include is.na
#19
bheavner
closed
7 years ago
2
make a save genetable to file function
#18
bheavner
closed
7 years ago
3
make tag argument optional on filter_gencode
#17
bheavner
closed
7 years ago
2
summary of imported gtf differs from script results..
#16
bheavner
closed
7 years ago
7
import_gencode() is very slow.
#15
bheavner
opened
7 years ago
0
Add meaningful tests
#14
bheavner
opened
7 years ago
2
Bounds object is larger than original.
#13
bheavner
closed
7 years ago
9
turn off progress bar on import function?
#12
bheavner
opened
7 years ago
0
update documentation of import_gencode()
#11
bheavner
closed
7 years ago
0
Parse optional arguments on import
#10
bheavner
closed
7 years ago
1
filtering error
#9
bheavner
closed
7 years ago
7
make define_boundaries()
#8
bheavner
closed
7 years ago
1
Add package documentation and index
#7
bheavner
opened
7 years ago
2
refactor code as needed to allow piping
#6
bheavner
opened
7 years ago
0
add lintr to tests?
#5
bheavner
closed
7 years ago
0
make function to select by feature and attribute.
#4
bheavner
closed
7 years ago
0
refactor genetable::import_gencode()
#3
bheavner
closed
7 years ago
1
Function(s) for summarizing gencode file
#2
bheavner
closed
7 years ago
1
Need a import function for gencode files
#1
bheavner
closed
7 years ago
1