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UWB-Biocomputing / Graphitti

A project to facilitate construction of high-performance simulations of graph-structured systems.
https://uwb-biocomputing.github.io/Graphitti/
Apache License 2.0
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Generate list of others' code that is part of BG+WB #64

Open stiber opened 6 years ago

stiber commented 6 years ago

This is a precursor to investigating their licenses, whether those are problematic for us and our licenses, and what we need to do to be in compliance with their licenses. Please generate one additional issue for each package that we're using, so someone else can follow up with details.

tchoi1131 commented 6 years ago

Dependencies in "pom.xml" in the Maven project for the Workbench. Next step is to go through elements one by one to find out what the libraries are.

commons-codec commons-codec 1.6 
    <dependency>
        <groupId>commons-io</groupId>
        <artifactId>commons-io</artifactId>
        <version>2.4</version>
    </dependency>
    <dependency>
        <groupId>org.apache.httpcomponents</groupId>
        <artifactId>httpclient</artifactId>
        <version>4.2.3</version>
    </dependency>
    <dependency>
        <groupId>org.apache.httpcomponents</groupId>
        <artifactId>httpcore</artifactId>
        <version>4.2.2</version>
    </dependency>
    <dependency>
        <groupId>jaxen</groupId>
        <artifactId>jaxen</artifactId>
        <version>1.1.6</version>
    </dependency>
    <dependency>
        <groupId>org.slf4j</groupId>
        <artifactId>jcl-over-slf4j</artifactId>
        <version>1.6.4</version>
    </dependency>
    <dependency>
        <groupId>org.jdom</groupId>
        <artifactId>jdom2</artifactId>
        <version>2.0.5</version>
    </dependency>
    <dependency>
        <groupId>org.apache.jena</groupId>
        <artifactId>jena-arq</artifactId>
        <version>3.3.0</version>
    </dependency>
    <dependency>
        <groupId>org.apache.jena</groupId>
        <artifactId>jena-core</artifactId>
        <version>3.3.0</version>
    </dependency>
    <dependency>
        <groupId>org.apache.jena</groupId>
        <artifactId>jena-iri</artifactId>
        <version>3.3.0</version>
    </dependency>
    <dependency>
        <groupId>org.apache.jena</groupId>
        <artifactId>jena-sdb</artifactId>
        <version>3.3.0</version>
    </dependency>
    <dependency>
        <groupId>org.apache.jena</groupId>
        <artifactId>jena-tdb</artifactId>
        <version>3.3.0</version>
    </dependency>
    <dependency>
        <groupId>joda-time</groupId>
        <artifactId>joda-time</artifactId>
        <version>2.3</version>
    </dependency>
    <dependency>
        <groupId>com.jcraft</groupId>
        <artifactId>jsch</artifactId>
        <version>0.1.51</version>
    </dependency>
    <dependency>
        <groupId>com.jgoodies</groupId>
        <artifactId>jgoodies-forms</artifactId>
        <version>1.9.0</version>
    </dependency>
    <dependency>
        <groupId>org.controlsfx</groupId>
        <artifactId>controlsfx</artifactId>
        <version>8.40.13</version>
    </dependency>
    <dependency>
        <groupId>org.fxmisc.richtext</groupId>
        <artifactId>richtextfx</artifactId>
        <version>0.8.1</version>
    </dependency>
    <dependency>
        <groupId>com.googlecode.java-diff-utils</groupId>
        <artifactId>diffutils</artifactId>
        <version>1.3.0</version>
    </dependency>
    <dependency>
        <groupId>org.eclipse.jgit</groupId>
        <artifactId>org.eclipse.jgit</artifactId>
        <version>4.9.0.201710071750-r</version>
    </dependency>
    <dependency>
        <groupId>org.eclipse.jgit</groupId>
        <artifactId>org.eclipse.jgit.http.server</artifactId>
        <version>4.9.0.201710071750-r</version>
    </dependency>
    <dependency>
        <groupId>org.eclipse.jgit</groupId>
        <artifactId>org.eclipse.jgit.ui</artifactId>
        <version>4.9.0.201710071750-r</version>
    </dependency>
    <dependency>
        <groupId>org.eclipse.jgit</groupId>
        <artifactId>org.eclipse.jgit.junit</artifactId>
        <version>4.9.0.201710071750-r</version>
    </dependency>
etcadinfinitum commented 5 years ago

For the refactoring project as part of UWB-Biocomputing/BrainGrid#208 & UWB-Biocomputing/BrainGrid#253, I have been using:

If we can decide where to start documenting external libraries, I can open a PR to add these.

stiber commented 3 years ago

Either duplicates or overlaps with issue #47

torisalvatore commented 3 years ago

Add to this list:

https://github.com/UWB-Biocomputing/Graphitti/blob/416b0c42beefdcc951e2b4ec441efafa0d6e529d/docs/BGDocs/02a_installRequirements.md

stiber commented 3 years ago

We should make sure to duplicate this information into the Workbench repo, if it isn't already there, because @tchoi1131's comment is a (possibly no longer current) list for that, not Graphitti. Then, we can edit his comment out of this, so it's clear for Graphitti.