Right now, we specify the main parameter file name on the command line. The neuron lists have relative path names inside that file. Those paths are relative to the working directory where BG is run, not where the parameter file is. We should come up with a way to make this more obvious, or we should do something like add a command line argument that specifies the parameter file directory and have the NList file paths be relative to that (and eliminate the need to provide the path in the command line argument for the main parameter file).
Right now, we specify the main parameter file name on the command line. The neuron lists have relative path names inside that file. Those paths are relative to the working directory where BG is run, not where the parameter file is. We should come up with a way to make this more obvious, or we should do something like add a command line argument that specifies the parameter file directory and have the NList file paths be relative to that (and eliminate the need to provide the path in the command line argument for the main parameter file).