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UcarLab / AMULET

A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
https://ucarlab.github.io/AMULET/
GNU General Public License v3.0
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Comment lines in fragments #8

Closed Zepeng-Mu closed 3 years ago

Zepeng-Mu commented 3 years ago

Hi, the fragment files from cellranger-atac 2.0.0 contains some comment lines starting with "#". I think currently this is not handled in AMULET, which throws an error. I added two lines of code myself that skips the comment lines and everything runs fine.

Thanks so much!

ajt986 commented 3 years ago

Thank you for pointing this out! I've just added a few lines of code to skip these lines in the fragment file so that AMULET can run correctly with cell ranger ATAC 2.0 outputs.