Ultimagen / healthomics-workflows

UltimaGenomics repository for workflows compatible with AWS HealthOmics
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Missing docker image for dv_training #9

Open pauline-ng opened 1 week ago

pauline-ng commented 1 week ago

Hi,

TL;DR Can you add dv_training to Docker Hub?

I'm going through the example on the README

python create_healthomics_workflow.py single_read_snv us-east-2 myome-nextflow-workdir --input_template single_read_snv_template-ppmSeq.json --omics_workflow_name single_read_snv_wf

gives an error

Error response from daemon: pull access denied for ultimagenomics/dv_training, repository does not exist or may require 'docker login': denied: requested access to the resource is denied

and I notice that Docker Hub does not have the dv_training image.

pauline-ng commented 1 week ago

Other docker images are missing. If these are set to private , can you set them public?:

        "cnv_docker": "ugbio_cnv:1.0.0",
       "dv_training_docker": "ultimagenomics/dv_training:v1.0.7",
       "reads_transformer_docker": "ultimagenomics/ug-reads-transformer:1.0",
        "segdup_docker": "ultimagenomics/parascopy:1.0_30e2e98",
        "vcflite_docker": "ultimagenomics/ugbio_vcflite:1.1.0"