netcdf-c has c++ dependency when linking and library built with --disable-libxml2 --disable-shared

[phildurbin]

• version 4.9.2
• ubuntu 20.04
• netcdf-c has a c++ dependency when linking using a library built with --disable-libxml2 --disable-shared via configure . when the libxml2 library is is disabled it uses the c++ code tinynxml. The problem is that when trying to build a static binary not all the symbols are resolved and the resulting library has a dependency on stdc++ library when linking applications. Hence is no longer a c library. configure options: ./configure --disable-libxml2 --disable-parallel4 --disable-shared --disable-dap-remote-tests --prefix=${CI_PROJECT_DIR}/netcdf-c

Then trying to compile the netcdf-fortran (or anything down stream) requires -lstdc++; eg gcc -o conftest -I/tis/releases/ac/zlib/1.2.11-1/include -I/tis/releases/ac/hdf4/4.2.16-3/include -I/tis/releases/ac/hdf5/1.14.3-5/include -I/tis/releases/ac/szip/2.1.1-3/include -I/tis/releases/ac/jpeg/9.1-1/include -I/scratch/pdurbin/tmp2/netcdf-c/include -L/tis/releases/ac/zlib/1.2.11-1/lib -L/tis/releases/ac/hdf4/4.2.16-3/lib -L/tis/releases/ac/hdf5/1.14.3-5/lib -L/tis/releases/ac/szip/2.1.1-3/lib -L/tis/releases/ac/jpeg/9.1-1/lib -L/scratch/pdurbin/tmp2/netcdf-c/lib ~/tmp.c -lnetcdf -lnetcdf -lhdf5_hl -lhdf5 -lm -lz -ldl -lcurl -lsz -ljpeg usr/bin/ld: /scratch/pdurbin/tmp2/netcdf-c/lib/libnetcdf.a(ncxml_tinyxml2.o): in function ncxml_parse': /scratch/pdurbin/netcdf-c-4.9.2/libncxml/ncxml_tinyxml2.cpp:35: undefined reference tooperator new(unsigned long)' /usr/bin/ld: /scratch/pdurbin/netcdf-c-4.9.2/libncxml/ncxml_tinyxml2.cpp:35: undefined reference to operator delete(void*)' /usr/bin/ld: /scratch/pdurbin/tmp2/netcdf-c/lib/libnetcdf.a(ncxml_tinyxml2.o):(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to__gxx_personality_v0' /usr/bin/ld: /scratch/pdurbin/tmp2/netcdf-c/lib/libnetcdf.a(tinyxml2.o): in function tinyxml2::DynArray<char, 20>::EnsureCapacity(int)': /scratch/pdurbin/netcdf-c-4.9.2/libncxml/tinyxml2.h:308: undefined reference tooperator new[](unsigned long)' /usr/bin/ld: /scratch/pdurbin/netcdf-c-4.9.2/libncxml/tinyxml2.h:312: undefined reference to operator delete[](void*)' /usr/bin/ld: /scratch/pdurbin/netcdf-c-4.9.2/libncxml/tinyxml2.h:308: undefined reference tooperator new[](unsigned long)' ... tmp.c is attached as tmp.c.txt which came from configure in netcdf-fortan tmp.c.txt

[DennisHeimbigner]

Not sure what can be done about this. DAP4 requires an XML parser: either tinyxml (built-in) or libxml2.

[WardF]

@DennisHeimbigner would turning off dap4 and nczarr remove the requirement for compiling tinyxml in the absense of libxml2? e.g., if DAP4 and nczarr are disabled, do we need an xml parser at all? I don't think we do, and I can gate it off if need be.

[DennisHeimbigner]

So as far as I can tell, C++ is needed for these files: ./libncxml/tinyxml2.cpp ./libncxml/ncxml_tinyxml2.cpp ./nczarr_test/tst_pure_awssdk.cpp ./libdispatch/ncs3sdk_aws.cpp ./libnczarr/zs3sdk.cpp

So yes, turning off DAP4 and NCZARR should disable the need for any xml library. As for tinyxml vs libxml2, if libxml2 is available, then the tinyxml2 code in libncxml should not need to be compiled.

[WardF]

If don't have libxml2 available, and we don't enable nczarr or DAP4, it seems like we can avoid compiling tinyxml2 and retain libnetcdf as a pure C library.

[DennisHeimbigner]

I think that is correct.