Intel LLVM does not like -lgfortran linker

HathewayWill commented 6 months ago

To report a non-security related issue, please provide:

the version of the software with which you are encountering an issue 4.6.1
environmental information (i.e. Operating System, compiler info, java version, python version, etc.) ubuntu 22.04.4 HDF5_Version=1.14.4 HDF5_Sub_Version=2 Zlib_Version=1.3.1 Netcdf_C_Version=4.9.2 Netcdf_Fortran_Version=4.6.1 Mpich_Version=4.2.1 Libpng_Version=1.6.39 Jasper_Version=1.900.1 Pnetcdf_Version=1.13.0
a description of the issue with the steps needed to reproduce it When compilling netcdf-fortran && netcdf-c with the -lgfortran flag it raises an error saying unable to compile using intel llvm compilers. When using the intel classic compilers it did not have this issue. Which is intel compilers before 2023

relevant files added

@edhartnett @edwardhartnett

autoreconf.log config.log configure.log

HathewayWill commented 6 months ago

I would think that the gnu compilers wouldn't cause a problem because the -lgcc linker can be in the CFLAGS command and it doesn't cause it to break. Only the -lgfortran.

Some relevant code that I am using:

    cd "${WRF_FOLDER}"/Downloads
    tar -xzvf v$Netcdf_C_Version.tar.gz
    cd netcdf-c-$Netcdf_C_Version/

    # these variables need to be set for the NetCDF-C install to work
    export CPPFLAGS=-I$DIR/grib2/include
    export LDFLAGS=-L$DIR/grib2/lib
    export LIBS="-lhdf5_hl -lhdf5 -lz -lcurl -lgcc -lm -ldl -lpnetcdf"
    autoreconf -i -f 2>&1 | tee autoreconf.log

    CC=$MPICC FC=$MPIFC CXX=$MPICXX F90=$MPIF90 F77=$MPIF77 CFLAGS=$CFLAGS ./configure --prefix=$DIR/NETCDF --disable-dap --enable-netcdf-4 --enable-netcdf4 --enable-shared --enable-static --enable-pnetcdf --enable-cdf5 --enable-parallel-tests 2>&1 | tee configure.log
    automake -a -f 2>&1 | tee automake.log
    make -j $CPU_HALF_EVEN 2>&1 | tee make.log
    make -j $CPU_HALF_EVEN install 2>&1 | tee make.install.log

    # other libraries below need these variables to be set
    export PATH=$DIR/NETCDF/bin:$PATH
    export NETCDF=$DIR/NETCDF

    echo " "
    ############################## NetCDF-Fortran library ############################

    cd "${WRF_FOLDER}"/Downloads
    tar -xvzf v$Netcdf_Fortran_Version.tar.gz
    cd netcdf-fortran-$Netcdf_Fortran_Version/

    # these variables need to be set for the NetCDF-Fortran install to work
    export LD_LIBRARY_PATH=$DIR/NETCDF/lib:$LD_LIBRARY_PATH
    export CPPFLAGS="-I$DIR/NETCDF/include -I$DIR/grib2/include"
    export LDFLAGS="-L$DIR/NETCDF/lib -L$DIR/grib2/lib"
    export LIBS="-lnetcdf -lpnetcdf -lcurl -lhdf5_hl -lhdf5 -lz -lm -ldl -lgcc "
    autoreconf -i -f 2>&1 | tee autoreconf.log
    CC=$MPICC FC=$MPIFC CXX=$MPICXX F90=$MPIF90 F77=$MPIF77 CFLAGS=$CFLAGS ./configure --prefix=$DIR/NETCDF --enable-netcdf-4 --enable-netcdf4 --enable-parallel-tests --enable-hdf5 2>&1 | tee configure.log
    automake -a -f 2>&1 | tee automake.log
    make -j $CPU_HALF_EVEN 2>&1 | tee make.log
    make -j $CPU_HALF_EVEN install 2>&1 | tee make.install.log

    echo " "
    #################################### System Environment Tests ##############

Log files with sucessful compiliation.

autoreconf.log config.log configure.log make.install.log make.log

HathewayWill commented 6 months ago

@WardF

Here's my issue that I opened with all the log files.

HathewayWill commented 6 months ago

@edhartnett @WardF

not sure why the linker for gfortran doesn't work. Seems to affect all versions of netcdf including cxx. Maybe it's an intel llvm problem?

WardF commented 5 months ago

Thanks for your patience; the netCDF-C release has been demanding a lot of my time. Let me review this.

HathewayWill commented 5 months ago

that's okay take your time, just trying to help @WardF

Unidata / netcdf-fortran

Intel LLVM does not like -lgfortran linker #439