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UoB-DSMP-2023-24
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dsmp-2024-group-7
dsmp-2024-group-7 created by GitHub Classroom
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Decide on content and write formative assessment
#31
bachdz142
closed
3 months ago
0
Presentation rehearsal and slides preparation
#30
bachdz142
closed
3 months ago
0
Select appropriate presentation template
#29
bachdz142
closed
3 months ago
0
Writing the report on each allocated parts
#28
bachdz142
closed
3 months ago
0
Select Slide templates, allocate tasks and person in charge of each section
#27
bachdz142
closed
3 months ago
0
use k-mer to encode the cdr3 sequence and add v,j segm and mhc column as feature to train the model
#26
YOHOHO111
opened
3 months ago
0
Try out K-means, DBSCAN, Agglomative model clustering
#25
bachdz142
closed
3 months ago
0
Task 6: Implement classification model, possible algorithm: KNN, SVM
#24
bachdz142
closed
3 months ago
0
Structurize summative report and task allocation for each section of the report
#23
bachdz142
closed
3 months ago
0
Task 6: use word embedding to emcode the sequence and use the result as a input to train the deep learning model
#22
YOHOHO111
closed
3 months ago
4
Task 6: Base on sequence try some machine learning method and train the model, like SVD, RF, GBM, and cross validation of models by using kfold
#21
YOHOHO111
opened
4 months ago
0
Set up google slide for collaborative slide prep
#20
bachdz142
closed
3 months ago
0
Implementing dimension reduction method PCA, combine to original dataset and plot alpha beta chain based on epitope
#19
bachdz142
closed
3 months ago
0
Practice for the formative assessment presentation
#18
bachdz142
closed
3 months ago
0
Prepare slides and scripts for data preprocessing and initial insights
#17
bachdz142
closed
3 months ago
0
Task 3: Attempt to implement TCRDist3 package, modify the dataset for appropriate inputs and make senses of the output (i.e combined pairwise distance)
#16
bachdz142
closed
3 months ago
0
Task 1: Preprocess data, gather insight, remove unwated and unecessary columns
#15
bachdz142
closed
3 months ago
0
Task 1: data exlporation part
#14
YOHOHO111
opened
5 months ago
0
Task3:try to compute the distance matrix of alpha chain and beta chain seperately by using tcrdist3
#13
YOHOHO111
opened
5 months ago
1
Task 2: Try coding methods (one-hot, word embedding, t, tokenizer, transformer), write explanatory documentation
#12
KIEwx
opened
5 months ago
0
Task 5: Try some cluster methods(K-means, spectral, DBSCAN, AHC)
#11
KIEwx
opened
5 months ago
2
Do weekly log
#10
bachdz142
closed
5 months ago
0
Presentation and slides preparation
#9
bachdz142
opened
5 months ago
0
Testing dimension reduction method (PCA), visualize alpha and beta chain
#8
bachdz142
opened
5 months ago
0
Task 4: reduce dimension and visualize the result
#7
YOHOHO111
opened
6 months ago
2
Task 2
#6
YOHOHO111
opened
6 months ago
0
Task 2
#5
bachdz142
opened
6 months ago
0
Task 3
#4
YOHOHO111
closed
3 months ago
0
111
#3
YOHOHO111
closed
6 months ago
0
Task 2
#2
YOHOHO111
opened
6 months ago
0
Task 3
#1
YOHOHO111
opened
6 months ago
0