UofABioinformaticsHub / RNAseq_snakemake

Bioinformatics Hub RNAseq snakemake pipeline
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featurecounts requires all samples rather than per sample #3

Open jimmybgammyknee opened 7 years ago

jimmybgammyknee commented 7 years ago

The featureCounts rule needs to be run with all samples as input rather than being run on each sample. At the moment it requires an additional step to paste each sample to one file (this file goes into R for differential expression)