Mismatches between the file data/circRNA_dataset.bed and the database

UofLBioinformatics / circDeep

End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning

MIT License

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Mismatches between the file data/circRNA_dataset.bed and the database #1

Closed hallogameboy closed 5 years ago

hallogameboy commented 5 years ago

I found lots of start and end points are different from the original database. For example, hsa_circ_00001 has 230350957-230357321, but the database indicates 230486703-230493067 with a shift. There are so many mismatches in the file with different shifts. Due to this problem, I am not sure if I extract correct fasta files and sequences. Do I misread any documentation? Some clarifications on the file could be very helpful. Thanks very much!

hallogameboy commented 5 years ago

Oh I found it would be the lift issue, so it would be fine.