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UofLBioinformatics / seekCRIT

seek for circular RNA in transcriptome (tool to identify deferentially expressed circRNAs between two samples)
MIT License
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Error in code #2

Open maanzaa opened 3 years ago

maanzaa commented 3 years ago

Hello ! I'm new to using this tool. After using the command., An exception keeps raising. Kindly look into it. This is the command used. python3 seekCRIT.py -o AC16_PEtest -t PE -fa /STORAGE/softwares/seekCRIT/genome/Homo_sapiens.GRCh38.dna.primary_assembly.fa --genomeIndex /STORAGE/softwares/seekCRIT/hg38_index -s1 /STORAGE/softwares/seekCRIT/circrna_ac16/AC16_RNA_Doxo_1.fastq:/STORAGE/softwares/seekCRIT/circrna_ac16/AC16_RNA_Doxo_2.fastq -s2 /STORAGE/softwares/seekCRIT/circrna_ac16/AC16_RNA_1.fastq:/STORAGE/softwares/seekCRIT/circrna_ac16/AC16_RNA_2.fastq -gtf /STORAGE/softwares/seekCRIT/genome/Homo_sapiens.GRCh38.99.gtf --threadNumber 20

the error is: Screenshot from 2021-04-16 21-50-00

kindly help. thanks, manasa

bluebear94 commented 3 years ago

Could you please provide the entire output of the program?