Trait Pages

[laceysanderson]

We need pages for traits. Tripal Core already supports creating content types based on controlled vocabularies where each term in the vocabulary is a page. This supports creating trait pages!

Now we just need some specialized fields:

• [x] ncit__method: Show all methods/units a trait was measured with
• [x] sio__study: List all experiments measuring the given trait. Includes listing the site-years, method and unit for the experiment.
• [x] local__phenotype_image: the phenotype images that were attached.
• [x] co_010__accession: When a germplasm name is entered it tells you the measurements in all experiments/site-years.
• [x] local__trait_summary: An overview of the locations, germplasm, values, experiments, years
  • [x] sbo__phenotype: the trait distribution chart after select the experiment

[laceysanderson]

ncit__method and sio__study are done in branch methods_field.

[laceysanderson]

With local__trait_summary in review, the next field to work on @reynoldtan is NCIT:data (which will replace co_010__accession). The data for this field will consist of an entry for each germplasm with data for this trait and will be based on the mview_phenotype table. It should look like:

[
    {
        'schema:name' => <stock_name>,
        'schema:name' => <experiment_name>,
        'NCIT:year' => <year>,
        'NCIT:location' => <location>,
        'NCIT:data' => <values>,
    }
]

The user will search for a given germplasm and be shown the following table:

Germplasm: CDC Redberry

Experiment	Location	Year	Mean	Standard Deviation
Lorem	ipsum	2017	34.5	1.2

OR for qualitative data:

Germplasm: CDC Redberry

Experiment	Location	Year	Observed Phenotypes	Number of Measurements
Lorem	ipsum	2017	W/P	3

[laceysanderson]

All are now complete