Closed bradfordcondon closed 3 years ago
Updated samples file to use the Citrus data from the Tripal tutorial, added a demonstration documentation page walking users through inserting the sample data. Tested and it now works on a blank website with only genotypes loader installed and only the steps outlined in the demonstration done.
I'm running the example command below after creating the matching organism and project.
and get the following error:
I may be making a bad assumption with #33 that the example files are "good to go".
I dump the erroring value:
so, this stock (germplasm?) needs a type, right? From samples.list... is this an argument i should be supplying with the command? should it be in the example file?
edit- oh i see, its not parsking the samples.list file correctly. the type should be Individual. Why isnt it parsing correctly?
edit- i manually re-parsed the input file, looks better, but i still have no type_id. i think this is because i dont have a term for "Individual" in my db. Should this be part of #35 ?
final edit- i replaced the "Individual" with a known term (mRNA) and still no loading...