The genotype_call table stored quality information in a meta_data JSONB column. We would like to utilize this data to provide quality filtering to users through the genotype matrix.
This functionality needs to be very flexible and extensible since the type of quality information varies between marker technologies and analysis pipelines. As a starting point we would like to implement a read depth cutoff.
The genotype_call table stored quality information in a meta_data JSONB column. We would like to utilize this data to provide quality filtering to users through the genotype matrix.
This functionality needs to be very flexible and extensible since the type of quality information varies between marker technologies and analysis pipelines. As a starting point we would like to implement a read depth cutoff.