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UofS-Pulse-Binfo / nd_genotypes

Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.
https://nd-genotypes.readthedocs.io/en/latest/index.html
GNU General Public License v2.0
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Link to Genotype Matrix Field #21

Closed laceysanderson closed 5 years ago

laceysanderson commented 5 years ago

We need a field for Germplasm, Variant, Marker and project pages which links to the genotype matrix, prefiltered for that set. Ideally for maintenance this would be a single field.

Mockup: image from ios

To make this work for all content types, I'm going to use the same approach is in Tripal Fancy Fields Quick Search where the admin can enter any combination of key=value pairs to filter the matrix on using values from fields on the page.

laceysanderson commented 5 years ago

Works on Projects (using taxrank:genus property) and sequence variants. Test on [fresh]/study/2653474 (has genotypes) and [fresh]/study/2653528 (no genotypes). Also, [fresh]/variant/Lens-culinaris/LcC00002p390

screen shot 2019-02-08 at 10 19 36 am

laceysanderson commented 5 years ago

Works on Genetic Markers. Test on [site]/genetic-marker/Lens-culinaris/LcC00002p390_454

laceysanderson commented 5 years ago

Works on Germplasm 🎉 Test on [fresh]/cultivar/2653699 (has genotypic data) and [fresh]/cultivar/2653738 (doesn't have genotypic data).