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UofS-Pulse-Binfo / nd_genotypes

Drupal/Tripal: Tripal interface for Chado Natural Diversity Genotypic data.
https://nd-genotypes.readthedocs.io/en/latest/index.html
GNU General Public License v2.0
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Sync error #51

Closed Xaiku closed 3 years ago

Xaiku commented 3 years ago

Versions: Tripal: 3 Drupal: 7.69 Postgres: 10.14 (Ubuntu 10.14-0ubuntu0.18.04.1) PHP: 7.3.24-3+ubuntu18.04.1+deb.sury.org+1

After loading in the vcf files with Genotypes Loader, I am trying to use ND genotypes to visualize the data, but when I try to Sync with Tripalus I get the following error:

image

Can someone help me with this error? Thank you in advance.

laceysanderson commented 3 years ago

Hi @Xaiku,

drush_log is provided by the command-line tool Drush. It's generally assumed that all Tripal Jobs are run using Drush since they are long running and often will not complete within the page load.

Did you attempt to run the sync job through the Tripal jobs interface or on the command line using drush trp-job-run? If you did use the interface, can you please use the command-line instead.

I'll add a note to the documentation to make it clear that sync especially should always be run on the command-line.

Xaiku commented 3 years ago

Hey @laceysanderson, It worked! Thank you!

laceysanderson commented 3 years ago

Awesome! Glad to hear! Let me know if there is anything else you come across where I could improve documentation or usability of the module :-)