search

UofS-Pulse-Binfo / tripal_qtl

Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.
GNU General Public License v2.0
0 stars 0 forks source link

QTL Listing on Genetic Map and Trait Pages #6

Closed laceysanderson closed 4 years ago

laceysanderson commented 4 years ago

This PR adds a QTL field which will be automatically added to Genetic Map and Trait pages.

Testing

  1. Load QTL data. See #3 for instructions on how to do this.

  2. Publish Genetic Map Pages: Go to Admin > Tripal Content > Publish Tripal Content and select "Genetic Map" from the drop down, submit and run job.

  3. Go to the Genetic Map pages which were just created and ensure the QTL you loaded are listed.

    Screen Shot 2019-10-28 at 4 26 53 PM

  4. Create a content type for your trait CV bu going to Admin > Structure > Tripal Content Types, Add new Tripal Content Type. Select "Trait" as the term and choose your cv when prompted.

  5. Publish your Trait Pages and ensure the QTL list shows up there as well.

    Screen Shot 2019-10-28 at 4 26 36 PM
Jiu9Shen commented 4 years ago

Screenshot from 2019-10-30 11-23-27

This tripal content is showing everything even though its not available?

Jiu9Shen commented 4 years ago

Screenshot from 2019-10-30 11-27-35

Don't know why the backgroup color is not configered...

laceysanderson commented 4 years ago

The two issues you pointed out are not related to this PR and can be fixed through configuration.

However, the fact that the peak lod and additive effect is not showing is concerning. Upon further thought I believe this is due to differences in cvterm ids 😓

Jiu9Shen commented 4 years ago

Screenshot from 2019-11-04 11-12-11 Screenshot from 2019-11-04 11-16-43

Jiu9Shen commented 4 years ago

bitmoji It works!