Urinx / alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research
Apache License 2.0
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README.md typo in command #2

Closed alprnbg closed 4 years ago

alprnbg commented 4 years ago

I guess, python alphafold.py -i test_data/T1019s2.pkl -o T1019s2_out -t D -t 0

should be python alphafold.py -i test_data/T1019s2.pkl -o T1019s2_out -t D -r 0

pentadotddot commented 4 years ago

Hi! Could you make this whole thing work with like a sequence which is not included already in the casp dataset? I am trying to make MSA with feature.sh from sars-cov2 sequences, but I could not manage to create tfrec files to input the alphafold machinery... :(

Urinx commented 4 years ago

@pentadotddot you can open a new issue to discuss, it's not related to this.