Nice and clean, but you have style.css in header.php + in functions.. = loading 2 times..
Missing favicon (in img folder)
Footer.php - also functions.js and in functions.php
You dont need reset.css (bootstrap 3) is using Normalize inside bootstrap.css
functions.js is loading into footer without jquery , to load it inside header and with jquery just add this to functions.php
wp_enqueue_script( 'wpstart-func', get_bloginfo('template_directory') . '/js/functions.js' , array( 'jquery' ));
register_nav_menu( 'primary', __( 'Navigation Menu', 'wpstarter' ) ); - functions.php + you have more menus down the line inside functions.php file...
Hi, thank you for the comments, have made some adjustments according to your observations. Not using bootstrap though that's why there is a separate reset.css