UtrechtUniversity / clumped-processing

Clumped isotope measurement processing script for Thermo Fisher MAT 253 plus isotope ratio mass spectrometer with the Kiel IV
GNU General Public License v3.0
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set default metadata parameters so that the process can run without manual intervention #3

Open japhir opened 2 years ago

japhir commented 2 years ago

Right now, the process requires manual intervention, which needs to be fixed so that in the future it can run unsupervised.

The current process:

for the scans: run target motu_scn_meta_update | pacman_scn_meta_update

for the files: run target motu_meta_update | pacman_meta_update | pacman_caf_meta_update

to upload results:

The desired process would have default metadata parameters that are filled in if the rows don't exist in metadata_parameters so that it can continue running!

japhir commented 2 years ago

David Beverborg suggested to just read in the excel file, add the new rows, overwrite the excel file with new rows.

Not sure if writexl can do this, I found https://github.com/ropensci/writexl/issues/29 about this.