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VCCRI / GEOracle

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Not able to start GEOracle #1

Open sahujagajjit opened 3 years ago

sahujagajjit commented 3 years ago

Hello Nice work. I have gone through the article and tried to execute using Georacle::Georacle(). I am getting the following error:

[1] "Connecting to ENSEMBL..." Warning: Error in listMarts: Unexpected format to the list of available marts. Please check the following URL manually, and try ?listMarts for advice. http://dec2015.archive.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt 57: stop 56: listMarts 55: useMart 54: find_supported_datasets [C:\Users\DELL\Documents\R\win-library\3.6\Georacle\shiny-app/server.R#1447] Error in listMarts(host = host, path = path, port = port, includeHosts = TRUE, : Unexpected format to the list of available marts. Please check the following URL manually, and try ?listMarts for advice. http://dec2015.archive.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt

goodb commented 2 years ago

Same here. The error is on line 1443 in the r.server file host.ID <- "dec2015.archive.ensembl.org" That archive no longer exists. I would guess changing that line to something like host.ID <- "feb2021.archive.ensembl.org" would fix things.