Installation error on R.3.6.2

[hmgene]

Hello, I got the following error after the installation. Thank you for the help in advance.

devtools::install_github("VCCRI/Sierra", build = TRUE, build_vignettes = TRUE, build_opts = c("--no-resave-data", "--no-manual")) Downloading GitHub repo VCCRI/Sierra@HEAD ✔ checking for file ‘/private/var/folders/28/jd9d90s50mdctp6_0jk1wthw0000gq/T/RtmpRyVoSj/remotesa75d3f6bab38/VCCRI-Sierra-ef71a45/DESCRIPTION’ ... ─ preparing ‘Sierra’: ✔ checking DESCRIPTION meta-information ... ─ installing the package to build vignettes ✔ creating vignettes (34s) ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘Sierra_0.99.22.tar.gz’

• installing source package ‘Sierra’ ... using staged installation R inst byte-compile and prepare package for lazy loading Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'Sierra' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'Sierra' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'Sierra' Warning: replacing previous import 'Gviz::tail' by 'utils::tail' when loading 'Sierra' Warning: replacing previous import 'Gviz::head' by 'utils::head' when loading 'Sierra' ** help * installing help indices building package indices installing vignettes testing if installed package can be loaded from temporary location Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'Sierra' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'Sierra' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'Sierra' Warning: replacing previous import 'Gviz::tail' by 'utils::tail' when loading 'Sierra' Warning: replacing previous import 'Gviz::head' by 'utils::head' when loading 'Sierra' testing if installed package can be loaded from final location Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'Sierra' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'Sierra' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'Sierra' Warning: replacing previous import 'Gviz::tail' by 'utils::tail' when loading 'Sierra' Warning: replacing previous import 'Gviz::head' by 'utils::head' when loading 'Sierra' testing if installed package keeps a record of temporary installation path
• DONE (Sierra)

  library(Sierra) Error: package or namespace load failed for ‘Sierra’ in namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, : lazy-load database '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/magrittr/R/magrittr.rdb' is corrupt In addition: Warning messages: 1: In namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, : restarting interrupted promise evaluation 2: In namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, : internal error -3 in R_decompress1

[rj-patrick]

Hi @hmgene,

I believe this error can occur when a loaded package has been updated. Try restarting your R session and I suspect it will work.

Cheers, Ralph

[hmgene]

Ralph, thanks it is working.

Best, Hyunmin