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VCCRI / Ularcirc

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
GNU General Public License v3.0
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Step 2 Not Working #21

Open sgrudz opened 1 year ago

sgrudz commented 1 year ago

STEP2: Load annotation databases: Ularcirc comes with one existing data set that has been aligned to hg38. While annotation is not required to identify circRNAs we recomment to download the respective human annotation databases as follows:

if (!requireNamespace("BiocManager", quietly=TRUE))
        install.packages("BiocManager")

\dontrun { 
  BiocManager::install(c("BSgenome.Hsapiens.UCSC.hg19",         # Genome; enables sequence analysis
                      "TxDb.Hsapiens.UCSC.hg19.knownGene",    # Transcript database
                      "org.Hs.eg.db"))                        # Annotation database
      }

When I run this, it says Error: unexpected symbol in "\dontrun"

davhum commented 9 months ago

Run just the following command

BiocManager::install(c("BSgenome.Hsapiens.UCSC.hg19", # Genome; enables sequence analysis "TxDb.Hsapiens.UCSC.hg19.knownGene", # Transcript database "org.Hs.eg.db"))