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VCCRI / Ularcirc

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
GNU General Public License v3.0
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Name Prefix Must End with Period But Not Documented #6

Closed DarioS closed 4 years ago

DarioS commented 4 years ago

For STAR's --outFileNamePrefix, it adds the suffixes directly to the end the prefix without any delimiter. For example, if the prefix is Patient1, the file name of the splice junctions file will be Patient1SJ.out.tab. However, Ularcirc demands that there is a period separating the prefix from the suffix, which is not what STAR does by default.

File must end with either .SJ.out.tab or .ReadsPerGene.out.tab or .Chimeric.out.junction Please review the following files that failed to upload: OC1hg38Chimeric.out.junction OC1hg38SJ.out.tab

Can the period be optional since STAR doesn't use one to separate the prefix from the suffix? In the meantime, I'll work around it by using soft links.

davhum commented 4 years ago

Good points. have updated so that both naming conventions can be accepted.