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VCCRI / scTalk

Intercellular communication analysis for scRNA-seq data
GNU General Public License v3.0
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Error with EvaluateConnections #6

Closed Jeff87075 closed 3 years ago

Jeff87075 commented 3 years ago

Hi, thanks for the nice package, I just want to ask what is the difference between the populations.use argument and pct.threshold argument in the GenerateEdgeWeights() function?

Also, since I have to run the workflow a lot of times across different combinations I've been trying to run the EvaluateConnections() with different populations.use however I'm getting these errors how can I solve them? 

Error in { : 
  task 2 failed - "cannot take a sample larger than the population when 'replace = FALSE'"
In addition: Warning message:
In e$fun(obj, substitute(ex), parent.frame(), e$data) :
  already exporting variable(s): complete.path.table, background.table
rj-patrick commented 3 years ago

Hi @Jeff87075,

A fix has been submitted that should allow you to run the package without error.

Cheers, Ralph