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VDBWRAIR / bactpipeline

Bacteria Pipeline modified from MRSN Bacteria Pipeline
GNU General Public License v2.0
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Summary report #1

Closed necrolyte2 closed 8 years ago

necrolyte2 commented 8 years ago

comma or tab separated

sample_id,contig_num,num_reads,%total_reads,N50
averagehat commented 8 years ago

closing in favor of #4 see Jun's comment

necrolyte2 commented 8 years ago

I don't understand why this is closed. He still wants the report

averagehat commented 8 years ago

right, but I considred it a duplicate because the request is for one report per samplesheet rather than one report-per-sample, and we already have issue #4

necrolyte2 commented 8 years ago

The reason it is best to write individual summary and contig files per project and then combine them at the end is because of parallelization. We will want to be able to run each project in it's own qsub job and then have a supplementary job to build the master summary and contigs directory