V2

[averagehat]

• [x] top 100 contigs file
• [x] master summary file #1 #4
• [x] primer trimming #2
• [x] fix setup #5
• [x] code documentation
• [x] travis
• [x] coveralls
• [x] add badges
• [x] readthedocs

[necrolyte2]

I rebased no-newbler onto here so will close #8