full pipeline testing

[averagehat]

Maybe sometime worth doing.

Read simulators:

• [ ] PBSim link
• [x] Illumina Art link

related project: https://github.com/isovic/overlap-benchmark

these could go in bioconda but they are only a testing dependency and not a part of the framework so the user won't have to install

Data:

• [ ] script to download reference from accession and mutate it etc.
• [ ] blast database

[averagehat]

• [ ] generate miseq from reference
• [ ] generate pacbio from reference
• [ ] mutation expected: 1043: A -> G, X%
• [ ] Make/download reference
• [ ] cut ref into X pieces, generate mutations on each piece
• [ ] denovo/mapping