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VDBWRAIR / pathdiscov

Pathogen Discover Pipeline
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diamond, bowtie, snap missing during setup #259

Closed necrolyte2 closed 9 years ago

necrolyte2 commented 9 years ago

I'm positive we had an issue for this before but can't find it now

Database commands are missing during database setup since they are installed during python setup.py install

I think the database setup portion should be moved to after the python setup.py install

necrolyte2 commented 9 years ago

if we move database setup to after setup.py install then we will also want to change the paths to bowtie-build and snap as they will be accessible by just their name