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VDBWRAIR / pyBWA

Python libraries to interact with BWA mapper
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Needs to support pipes #1

Open necrolyte2 opened 10 years ago

necrolyte2 commented 10 years ago

Currently it expects a file as the output parameter to run Would be much more efficient if a person wanted to use PIPE's

astewart-twist commented 8 years ago

It'd be great if this could feed right into https://github.com/pysam-developers/pysam

necrolyte2 commented 8 years ago

pysam doesn't support reading input directly from python objects(you have to supply a file path or - to read from stdin)

Regardless, I think this project is a bit deprecated since using the sh module is probably going to be much easier for you