New clin biospec templates

[jmvera255]

Change Log

• convert attribute strings to snake case
• replace extraintestinal_manifestations_history with extraintestinal_manifestations
• replace immunodeficiency_diagnosis with immunodeficiency
• remove birth_country, is_rc2, second_hand_smoke_exposure from Clinical Metadata Template
• add external_share, participant_id, project to Clinical Metadata Template
• remove the following attributes: biopsies_number, biopsy_inflammation_status, biopsy_location, cell_number, cell_viability, diagnosis_category, funding_source, notes, preservation_method, shipping_tracking_number, shipping_vendor, specimen_id, specimen_idsource, unique_id, volume_unit, coordinator_or_md_name, courier_tracking_number, courier_name from biospecimen template
• add the following attributes: collection_age, collection_id, collection_num, inflammation, media, participant_id, project, sample_id, sample_num, site, specimen_area_biopsy, type_key, vial_label to biospecimen template
• remove conditional dependencies for the following valid values: biopsy, serum, pbmc, pax
• set new conditional dependency for valid value biopsy for media.
• remove sibling_type, autoimmune_details, gi_surgeries_details, breastfeeding_duration which are no longer used in any templates
• assign the following attributes to data dictionary modules
  • Clinical participant_id, external_share
  • Biospecimen project, type_key, specimen_area_biopsy, inflammation, media
• set regex search validation rules

[jmvera255]

need to follow up with updating requirements.txt to pin numpy version