VEuPathDB / EdaNewIssues

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standardize mutation nomenclature #523

Open danicahelb opened 1 year ago

danicahelb commented 1 year ago

@dpbisme please follow up with your contacts to see about how we should standardize mutation nomenclature

  1. Standard mutation nomenclature based on coding DNA reference sequences and protein-level amino acid sequences requires prefixes “c.” and “p.”
  2. “>” vs “->” (I think “>” is standard?)
  3. amino acid abbreviation: 3 letter code vs 1 letter code

Also see this publication on standard mutation nomenclature: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1867422/

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