VEuPathDB / EdaNewIssues

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Mbio: Visualization 500 Unable to fetch all required data #730

Closed asizemore closed 7 months ago

asizemore commented 7 months ago

Found on the qa site just now:

Example:

Screen Shot 2023-11-21 at 8 15 55 AM

Received the same error with ranked abundance box and scatter, and the regular non-compute box and scatter. Did not see the error with differential abundance volcano (using cached compute result) or regular scatter.

I'm guessing something changed in the box and scatter plugins? Not sure yet!

asizemore commented 7 months ago

The error in the data service says

Caused by: java.lang.RuntimeException: 500 Internal Server Error: {"status":"server-error","message":"Tabular subsetting result of type 'EUPATH_0000738' contained unexpected header.\nExpected:ParticipantRepeatedMeasure_stable_id,Participant_stable_id,OBI_0001169\nFound   : EUPATH_0000738.ParticipantRepeatedMeasure_stable_id,EUPATH_0000096.Participant_stable_id,EUPATH_0000738.OBI_0001169","requestId":"2qIc22NbJyydRNY13zuTHz"}
asizemore commented 7 months ago

Merge service says

Tabular subsetting result of type 'EUPATH_0000738' contained unexpected header.
Expected:ParticipantRepeatedMeasure_stable_id,Participant_stable_id,OBI_0001169
Found   : EUPATH_0000738.ParticipantRepeatedMeasure_stable_id,EUPATH_0000096.Participant_stable_id,EUPATH_0000738.OBI_0001169
asizemore commented 7 months ago

Also can affect computes... but i think only sometimes? Got the following error in the compute service

500 Internal Server Error: {"status":"server-error","message":"Tabular subsetting result of type 'EUPATH_0000096' contained unexpected header.\nExpected:Participant_stable_id,EUPATH_0000639\nFound   : EUPATH_0000096.Participant_stable_id,EUPATH_0000096.EUPATH_0000639","requestId":"6f3kHa3ifuNY3iR3TyWYop"}

with the following setup (seen on local dev but using qa backend)

Screen Shot 2023-11-21 at 9 03 12 AM
asizemore commented 7 months ago

Sometimes computes succeed. For example i just ran the following and it worked...

Screen Shot 2023-11-21 at 9 01 29 AM

Maybe it has to do with the entity?

asizemore commented 7 months ago

looks like it'll be resolved via some recent changes from Ryan. Confirmed working on his dev site.